Workflow of DeepKneeExplainer: X-rays and MRIs are first comprehensively preprocessed through the deep-stacked transformation steps. Then, regions of interest are extract...
Abstract:
Osteoarthritis (OA) is a degenerative joint disease, which significantly affects middle-aged and elderly people. Although primarily identified via hyaline cartilage chang...Show MoreMetadata
Abstract:
Osteoarthritis (OA) is a degenerative joint disease, which significantly affects middle-aged and elderly people. Although primarily identified via hyaline cartilage change based on medical images, technical bottlenecks like noise, artifacts, and modality impose an enormous challenge on high-precision, objective, and efficient early quantification of OA. Owing to recent advancements, approaches based on neural networks (DNNs) have shown outstanding success in this application domain. However, due to nested non-linear and complex structures, DNNs are mostly opaque and perceived as black-box methods, which raises numerous legal and ethical concerns. Moreover, these approaches do not have the ability to provide the reasoning behind diagnosis decisions in the way humans would do, which poses an additional risk in the clinical setting. In this paper, we propose a novel explainable method for knee OA diagnosis based on radiographs and magnetic resonance imaging (MRI), which we called DeepKneeExplainer. First, we comprehensively preprocess MRIs and radiographs through the deep-stacked transformation technique against possible noises and artifacts that could contain unseen images for domain generalization. Then, we extract the region of interests (ROIs) by employing U-Net architecture with ResNet backbone. To classify the cohorts, we train DenseNet and VGG architectures on the extracted ROIs. Finally, we highlight class-discriminating regions using gradient-guided class activation maps (Grad-CAM++) and layer-wise relevance propagation (LRP), followed by providing human-interpretable explanations of the predictions. Comprehensive experiments based on the multicenter osteoarthritis study (MOST) cohorts, our approach yields up to 91% classification accuracy, outperforming comparable state-of-the-art approaches. We hope that our results will encourage medical researchers and developers to adopt explainable methods and DNN-based analytic pipelines towards an increasing acceptance...
Workflow of DeepKneeExplainer: X-rays and MRIs are first comprehensively preprocessed through the deep-stacked transformation steps. Then, regions of interest are extract...
Published in: IEEE Access ( Volume: 9)

Fraunhofer Institute for Applied Information Technology (FIT), Sankt Augustin, Germany
Computer Science 5-Information Systems and Databases, RWTH Aachen University, Aachen, Germany
Md. Rezaul Karim received the M.Sc. degree in computer science from Kyung Hee University, South Korea. He is currently pursuing the Ph.D. degree with RWTH Aachen University, Germany. He is also an Applied and Data Scientist with Fraunhofer FIT, Germany. Previously, he worked as a Researcher with the Insight Centre for Data Analytics, Ireland, and as a Lead Software Engineer with Samsung Electronics Company Ltd. His resear...Show More
Md. Rezaul Karim received the M.Sc. degree in computer science from Kyung Hee University, South Korea. He is currently pursuing the Ph.D. degree with RWTH Aachen University, Germany. He is also an Applied and Data Scientist with Fraunhofer FIT, Germany. Previously, he worked as a Researcher with the Insight Centre for Data Analytics, Ireland, and as a Lead Software Engineer with Samsung Electronics Company Ltd. His resear...View more

Fraunhofer Institute for Systems and Innovation Research ISI, Karlsruhe, Germany
Jiao Jiao received the B.Sc. degree from the Beijing University of Technology, China, and the M.Sc. degree from RWTH Aachen University, Germany. She is currently a Data Scientist with Fraunhofer ISI, Germany. Her research interests include explainable AI and text mining.
Jiao Jiao received the B.Sc. degree from the Beijing University of Technology, China, and the M.Sc. degree from RWTH Aachen University, Germany. She is currently a Data Scientist with Fraunhofer ISI, Germany. Her research interests include explainable AI and text mining.View more

Fraunhofer Institute for Applied Information Technology (FIT), Sankt Augustin, Germany
Computer Science 5-Information Systems and Databases, RWTH Aachen University, Aachen, Germany
Till Döhmen received the M.Sc. degree in artificial intelligence from Vrije Universiteit Amsterdam, The Netherlands. He is currently pursuing the Ph.D. degree with RWTH Aachen University, Germany. He is also a Data Science Solution Architect with Fraunhofer FIT. His research interests include knowledge graphs, machine learning, and explainable AI.
Till Döhmen received the M.Sc. degree in artificial intelligence from Vrije Universiteit Amsterdam, The Netherlands. He is currently pursuing the Ph.D. degree with RWTH Aachen University, Germany. He is also a Data Science Solution Architect with Fraunhofer FIT. His research interests include knowledge graphs, machine learning, and explainable AI.View more

Department of Computer Science, Faculty of Sciences, Vrije Universiteit Amsterdam, Amsterdam, The Netherlands
Elsevier’s Discovery Lab, Amsterdam, The Netherlands
Michael Cochez received the B.Sc. degree in information technology from the University of Antwerp, Belgium, and the M.Sc. and Ph.D. degrees in mathematical information technology from the University of Jyväskylä, Finland. He was formerly a Postdoctoral Researcher with Fraunhofer FIT. He is currently an Assistant Professor of Artificial Intelligence with Vrije Universiteit Amsterdam, The Netherlands. His research interests...Show More
Michael Cochez received the B.Sc. degree in information technology from the University of Antwerp, Belgium, and the M.Sc. and Ph.D. degrees in mathematical information technology from the University of Jyväskylä, Finland. He was formerly a Postdoctoral Researcher with Fraunhofer FIT. He is currently an Assistant Professor of Artificial Intelligence with Vrije Universiteit Amsterdam, The Netherlands. His research interests...View more

Fraunhofer Institute for Applied Information Technology (FIT), Sankt Augustin, Germany
Computer Science 5-Information Systems and Databases, RWTH Aachen University, Aachen, Germany
Oya Beyan is currently a Researcher with Fraunhofer FIT and RWTH Aachen University, Germany. At Fraunhofer FIT, she’s leading the “FAIR Data & Distributed Analytics” group. Her research interests include methods of data reusability and FAIR data, data-driven transformation, and distributed analytics.
Oya Beyan is currently a Researcher with Fraunhofer FIT and RWTH Aachen University, Germany. At Fraunhofer FIT, she’s leading the “FAIR Data & Distributed Analytics” group. Her research interests include methods of data reusability and FAIR data, data-driven transformation, and distributed analytics.View more

ZB MED—Information Centre for Life Sciences, Cologne, Germany
Dietrich Rebholz-Schuhmann was formerly the Director of the Insight Centre for Data Analytics and a Professor with NUI Galway, Ireland. He is currently a Professor of medicine with the University of Cologne and the Scientific Director of the German National Library of Medicine (ZB MED), Cologne, Germany. His research interests include data science, semantics driven data analytics, biomedical data mining, and bioinformatic...Show More
Dietrich Rebholz-Schuhmann was formerly the Director of the Insight Centre for Data Analytics and a Professor with NUI Galway, Ireland. He is currently a Professor of medicine with the University of Cologne and the Scientific Director of the German National Library of Medicine (ZB MED), Cologne, Germany. His research interests include data science, semantics driven data analytics, biomedical data mining, and bioinformatic...View more

Fraunhofer Institute for Applied Information Technology (FIT), Sankt Augustin, Germany
Computer Science 5-Information Systems and Databases, RWTH Aachen University, Aachen, Germany
Stefan Decker was formerly a Professor and the Director of the Insight Centre for Data Analytics, NUI Galway, Ireland. He is currently the Managing Director of Fraunhofer FIT and a Professor of Computer Science with RWTH Aachen University, Germany. His research interests include information systems, semantic web and linked data, data science, and knowledge representation.
Stefan Decker was formerly a Professor and the Director of the Insight Centre for Data Analytics, NUI Galway, Ireland. He is currently the Managing Director of Fraunhofer FIT and a Professor of Computer Science with RWTH Aachen University, Germany. His research interests include information systems, semantic web and linked data, data science, and knowledge representation.View more

Fraunhofer Institute for Applied Information Technology (FIT), Sankt Augustin, Germany
Computer Science 5-Information Systems and Databases, RWTH Aachen University, Aachen, Germany
Md. Rezaul Karim received the M.Sc. degree in computer science from Kyung Hee University, South Korea. He is currently pursuing the Ph.D. degree with RWTH Aachen University, Germany. He is also an Applied and Data Scientist with Fraunhofer FIT, Germany. Previously, he worked as a Researcher with the Insight Centre for Data Analytics, Ireland, and as a Lead Software Engineer with Samsung Electronics Company Ltd. His research interests include machine learning, bioinformatics, and explainable artificial intelligence (XAI).
Md. Rezaul Karim received the M.Sc. degree in computer science from Kyung Hee University, South Korea. He is currently pursuing the Ph.D. degree with RWTH Aachen University, Germany. He is also an Applied and Data Scientist with Fraunhofer FIT, Germany. Previously, he worked as a Researcher with the Insight Centre for Data Analytics, Ireland, and as a Lead Software Engineer with Samsung Electronics Company Ltd. His research interests include machine learning, bioinformatics, and explainable artificial intelligence (XAI).View more

Fraunhofer Institute for Systems and Innovation Research ISI, Karlsruhe, Germany
Jiao Jiao received the B.Sc. degree from the Beijing University of Technology, China, and the M.Sc. degree from RWTH Aachen University, Germany. She is currently a Data Scientist with Fraunhofer ISI, Germany. Her research interests include explainable AI and text mining.
Jiao Jiao received the B.Sc. degree from the Beijing University of Technology, China, and the M.Sc. degree from RWTH Aachen University, Germany. She is currently a Data Scientist with Fraunhofer ISI, Germany. Her research interests include explainable AI and text mining.View more

Fraunhofer Institute for Applied Information Technology (FIT), Sankt Augustin, Germany
Computer Science 5-Information Systems and Databases, RWTH Aachen University, Aachen, Germany
Till Döhmen received the M.Sc. degree in artificial intelligence from Vrije Universiteit Amsterdam, The Netherlands. He is currently pursuing the Ph.D. degree with RWTH Aachen University, Germany. He is also a Data Science Solution Architect with Fraunhofer FIT. His research interests include knowledge graphs, machine learning, and explainable AI.
Till Döhmen received the M.Sc. degree in artificial intelligence from Vrije Universiteit Amsterdam, The Netherlands. He is currently pursuing the Ph.D. degree with RWTH Aachen University, Germany. He is also a Data Science Solution Architect with Fraunhofer FIT. His research interests include knowledge graphs, machine learning, and explainable AI.View more

Department of Computer Science, Faculty of Sciences, Vrije Universiteit Amsterdam, Amsterdam, The Netherlands
Elsevier’s Discovery Lab, Amsterdam, The Netherlands
Michael Cochez received the B.Sc. degree in information technology from the University of Antwerp, Belgium, and the M.Sc. and Ph.D. degrees in mathematical information technology from the University of Jyväskylä, Finland. He was formerly a Postdoctoral Researcher with Fraunhofer FIT. He is currently an Assistant Professor of Artificial Intelligence with Vrije Universiteit Amsterdam, The Netherlands. His research interests include knowledge representation, machine learning, and data mining.
Michael Cochez received the B.Sc. degree in information technology from the University of Antwerp, Belgium, and the M.Sc. and Ph.D. degrees in mathematical information technology from the University of Jyväskylä, Finland. He was formerly a Postdoctoral Researcher with Fraunhofer FIT. He is currently an Assistant Professor of Artificial Intelligence with Vrije Universiteit Amsterdam, The Netherlands. His research interests include knowledge representation, machine learning, and data mining.View more

Fraunhofer Institute for Applied Information Technology (FIT), Sankt Augustin, Germany
Computer Science 5-Information Systems and Databases, RWTH Aachen University, Aachen, Germany
Oya Beyan is currently a Researcher with Fraunhofer FIT and RWTH Aachen University, Germany. At Fraunhofer FIT, she’s leading the “FAIR Data & Distributed Analytics” group. Her research interests include methods of data reusability and FAIR data, data-driven transformation, and distributed analytics.
Oya Beyan is currently a Researcher with Fraunhofer FIT and RWTH Aachen University, Germany. At Fraunhofer FIT, she’s leading the “FAIR Data & Distributed Analytics” group. Her research interests include methods of data reusability and FAIR data, data-driven transformation, and distributed analytics.View more

ZB MED—Information Centre for Life Sciences, Cologne, Germany
Dietrich Rebholz-Schuhmann was formerly the Director of the Insight Centre for Data Analytics and a Professor with NUI Galway, Ireland. He is currently a Professor of medicine with the University of Cologne and the Scientific Director of the German National Library of Medicine (ZB MED), Cologne, Germany. His research interests include data science, semantics driven data analytics, biomedical data mining, and bioinformatics.
Dietrich Rebholz-Schuhmann was formerly the Director of the Insight Centre for Data Analytics and a Professor with NUI Galway, Ireland. He is currently a Professor of medicine with the University of Cologne and the Scientific Director of the German National Library of Medicine (ZB MED), Cologne, Germany. His research interests include data science, semantics driven data analytics, biomedical data mining, and bioinformatics.View more

Fraunhofer Institute for Applied Information Technology (FIT), Sankt Augustin, Germany
Computer Science 5-Information Systems and Databases, RWTH Aachen University, Aachen, Germany
Stefan Decker was formerly a Professor and the Director of the Insight Centre for Data Analytics, NUI Galway, Ireland. He is currently the Managing Director of Fraunhofer FIT and a Professor of Computer Science with RWTH Aachen University, Germany. His research interests include information systems, semantic web and linked data, data science, and knowledge representation.
Stefan Decker was formerly a Professor and the Director of the Insight Centre for Data Analytics, NUI Galway, Ireland. He is currently the Managing Director of Fraunhofer FIT and a Professor of Computer Science with RWTH Aachen University, Germany. His research interests include information systems, semantic web and linked data, data science, and knowledge representation.View more