RegionInpaint, Cutoff and RegionMix: Introducing Novel Augmentation Techniques for Enhancing the Generalization of Brain Tumor Identification | IEEE Journals & Magazine | IEEE Xplore

RegionInpaint, Cutoff and RegionMix: Introducing Novel Augmentation Techniques for Enhancing the Generalization of Brain Tumor Identification


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Video representation for "RegionInpaint, Cutoff and RegionMix: Introducing Novel Augmentation Techniques for Enhancing the Generalization of Brain Tumor Identification".

Abstract:

Brain tumors are considered one of the most crucial and threatening diseases in the world as they affect the central nervous system and the main functionalities of the br...Show More

Abstract:

Brain tumors are considered one of the most crucial and threatening diseases in the world as they affect the central nervous system and the main functionalities of the brain. Early diagnosis and identification of brain tumors can significantly enhance the likelihood of patient survival. Generally, deep neural networks require large samples of annotated data to achieve promising results. Most studies in the medical domain suffer from limited data which negatively impacts the model performance. Common ways to handle such problems are to generate new samples using basic augmentation techniques, generative adversarial networks, etc. In this study, we propose several novel augmentation techniques, named RegionInpaint augmentation, Cutoff augmentation, and RegionMix augmentation to improve the performance of brain tumor identification and facilitate the training of deep learning models with limited samples. In addition, traditional augmentation techniques are used to extend the training samples. A pre-trained VGG19 model is experimented along with the proposed augmentation techniques and achieved an accuracy of 100% on the unseen validation set of the SPMRI small dataset using RegionInpaint and Cutoff augmentation techniques together. On the other hand, the best testing accuracy achieved is 96.88% on the Br35H dataset which is obtained when using all the augmentation techniques together (i.e., RegionInpaint, Cutoff, RegionMix, and Basic augmentation techniques). Compared to the state-of-the-art related studies, it has been observed that our results are superior which demonstrates the efficiency of our proposed augmentation techniques and the overall proposed methodology. The source code is available at https://github.com/omarsherif200/RegionInpaint-Cutoff-and-RegionMix-augmentation-techniques.
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Video representation for "RegionInpaint, Cutoff and RegionMix: Introducing Novel Augmentation Techniques for Enhancing the Generalization of Brain Tumor Identification".
Published in: IEEE Access ( Volume: 11)
Page(s): 83232 - 83250
Date of Publication: 04 August 2023
Electronic ISSN: 2169-3536
Author image of Omar S. El-Assiouti
Department of Scientific Computing, Ain Shams University, Cairo, Egypt
Omar S. El-Assiouti was born in New York, USA, in 1998. He received the B.Sc. degree (Hons.) in computer science from Ain Shams University, Egypt, in 2020, where he is currently pursuing the M.Sc. degree in scientific computing with the Faculty of Computer and Information Sciences. He is also a Teaching Assistant with the Department of Scientific Computing, Faculty of Computer and Information Sciences, Ain Shams Universit...Show More
Omar S. El-Assiouti was born in New York, USA, in 1998. He received the B.Sc. degree (Hons.) in computer science from Ain Shams University, Egypt, in 2020, where he is currently pursuing the M.Sc. degree in scientific computing with the Faculty of Computer and Information Sciences. He is also a Teaching Assistant with the Department of Scientific Computing, Faculty of Computer and Information Sciences, Ain Shams Universit...View more
Author image of Ghada Hamed
Department of Scientific Computing, Ain Shams University, Cairo, Egypt
Ghada Hamed received the B.Sc. degree from the Faculty of Computers and Information Sciences, Ain Shams University, Cairo, Egypt, the first M.Sc. degree in DNA-based steganography, and the second M.Sc. and Ph.D. degrees in scientific computing from the Faculty of Computers and Information Sciences, Ain Shams University, in 2012 and 2017, respectively. She is currently a Lecturer with the Scientific Computing Department, F...Show More
Ghada Hamed received the B.Sc. degree from the Faculty of Computers and Information Sciences, Ain Shams University, Cairo, Egypt, the first M.Sc. degree in DNA-based steganography, and the second M.Sc. and Ph.D. degrees in scientific computing from the Faculty of Computers and Information Sciences, Ain Shams University, in 2012 and 2017, respectively. She is currently a Lecturer with the Scientific Computing Department, F...View more
Author image of Hadeer El-Saadawy
Department of Scientific Computing, Ain Shams University, Cairo, Egypt
Hadeer El-Saadawy received the B.Sc. (Hons.), M.Sc., and Ph.D. degrees in scientific computing from Ain Shams University, in 2013, 2018, and 2021, respectively. She is currently a Lecturer with the Department of Scientific Computing, Faculty of Computer and Information Sciences, Ain Shams University. Her research interests include bioinformatics, signal processing, machine learning, and deep learning. She has published te...Show More
Hadeer El-Saadawy received the B.Sc. (Hons.), M.Sc., and Ph.D. degrees in scientific computing from Ain Shams University, in 2013, 2018, and 2021, respectively. She is currently a Lecturer with the Department of Scientific Computing, Faculty of Computer and Information Sciences, Ain Shams University. Her research interests include bioinformatics, signal processing, machine learning, and deep learning. She has published te...View more
Author image of Hala M. Ebied
Department of Scientific Computing, Ain Shams University, Cairo, Egypt
Hala M. Ebied received the B.Sc. degree in pure mathematics and computer science from the Faculty of Science, Ain Shams University, Egypt, and the M.Sc. and Ph.D. degrees in computer and information sciences from Ain Shams University, in 2002 and 2009, respectively. She has been a Professor with the Faculty of Computer and Information Sciences (FCIS), Ain Shams University, Egypt, since 2019. From 2006 to 2008, she was a P...Show More
Hala M. Ebied received the B.Sc. degree in pure mathematics and computer science from the Faculty of Science, Ain Shams University, Egypt, and the M.Sc. and Ph.D. degrees in computer and information sciences from Ain Shams University, in 2002 and 2009, respectively. She has been a Professor with the Faculty of Computer and Information Sciences (FCIS), Ain Shams University, Egypt, since 2019. From 2006 to 2008, she was a P...View more
Author image of Dina Khattab
Department of Scientific Computing, Ain Shams University, Cairo, Egypt
Dina Khattab received the B.S. and M.S. degrees in scientific computing and the Ph.D. degree in computer vision in the field of 2-D/3-D segmentations and deformations from the Faculty of Computer and Information Sciences, Ain Shams University, Cairo, Egypt, in 2003, 2008, and 2016, respectively.
From 2010 to 2011, she has collaborated as a Guest Researcher with the Group of Computer Graphics, Max-Planck Institut Informatik...Show More
Dina Khattab received the B.S. and M.S. degrees in scientific computing and the Ph.D. degree in computer vision in the field of 2-D/3-D segmentations and deformations from the Faculty of Computer and Information Sciences, Ain Shams University, Cairo, Egypt, in 2003, 2008, and 2016, respectively.
From 2010 to 2011, she has collaborated as a Guest Researcher with the Group of Computer Graphics, Max-Planck Institut Informatik...View more

Author image of Omar S. El-Assiouti
Department of Scientific Computing, Ain Shams University, Cairo, Egypt
Omar S. El-Assiouti was born in New York, USA, in 1998. He received the B.Sc. degree (Hons.) in computer science from Ain Shams University, Egypt, in 2020, where he is currently pursuing the M.Sc. degree in scientific computing with the Faculty of Computer and Information Sciences. He is also a Teaching Assistant with the Department of Scientific Computing, Faculty of Computer and Information Sciences, Ain Shams University. His research interests include deep learning, machine learning, computer vision, and image processing.
Omar S. El-Assiouti was born in New York, USA, in 1998. He received the B.Sc. degree (Hons.) in computer science from Ain Shams University, Egypt, in 2020, where he is currently pursuing the M.Sc. degree in scientific computing with the Faculty of Computer and Information Sciences. He is also a Teaching Assistant with the Department of Scientific Computing, Faculty of Computer and Information Sciences, Ain Shams University. His research interests include deep learning, machine learning, computer vision, and image processing.View more
Author image of Ghada Hamed
Department of Scientific Computing, Ain Shams University, Cairo, Egypt
Ghada Hamed received the B.Sc. degree from the Faculty of Computers and Information Sciences, Ain Shams University, Cairo, Egypt, the first M.Sc. degree in DNA-based steganography, and the second M.Sc. and Ph.D. degrees in scientific computing from the Faculty of Computers and Information Sciences, Ain Shams University, in 2012 and 2017, respectively. She is currently a Lecturer with the Scientific Computing Department, Faculty of Computers and Information Sciences, Ain Shams University. From 2018 to 2021, she did the Ph.D. research on breast cancer diagnosis and how to utilize the computer science field with the medical field to contribute with added value CADs. Since 2013, she has been a teaching assistant. Since 2017, she has been an assistant lecturer and a researcher in scientific computing. She has participated in many research projects related to image processing, such as video resolution enhancement, DNA steganography, operating systems development, and breast cancer. She has coauthored about 14 research articles in refereed journals, such as Biosystems and Computer Methods and Programs in Biomedicine (Elsevier) besides other international conferences. Her research interests include the merge of neural networks, algorithms analysis and design, deep learning methodologies, and computer vision with bioinformatics. She is a Reviewer in some distinguished international journals, such as Multimedia Systems and the International Journal of Intelligent Computing and Information Sciences.
Ghada Hamed received the B.Sc. degree from the Faculty of Computers and Information Sciences, Ain Shams University, Cairo, Egypt, the first M.Sc. degree in DNA-based steganography, and the second M.Sc. and Ph.D. degrees in scientific computing from the Faculty of Computers and Information Sciences, Ain Shams University, in 2012 and 2017, respectively. She is currently a Lecturer with the Scientific Computing Department, Faculty of Computers and Information Sciences, Ain Shams University. From 2018 to 2021, she did the Ph.D. research on breast cancer diagnosis and how to utilize the computer science field with the medical field to contribute with added value CADs. Since 2013, she has been a teaching assistant. Since 2017, she has been an assistant lecturer and a researcher in scientific computing. She has participated in many research projects related to image processing, such as video resolution enhancement, DNA steganography, operating systems development, and breast cancer. She has coauthored about 14 research articles in refereed journals, such as Biosystems and Computer Methods and Programs in Biomedicine (Elsevier) besides other international conferences. Her research interests include the merge of neural networks, algorithms analysis and design, deep learning methodologies, and computer vision with bioinformatics. She is a Reviewer in some distinguished international journals, such as Multimedia Systems and the International Journal of Intelligent Computing and Information Sciences.View more
Author image of Hadeer El-Saadawy
Department of Scientific Computing, Ain Shams University, Cairo, Egypt
Hadeer El-Saadawy received the B.Sc. (Hons.), M.Sc., and Ph.D. degrees in scientific computing from Ain Shams University, in 2013, 2018, and 2021, respectively. She is currently a Lecturer with the Department of Scientific Computing, Faculty of Computer and Information Sciences, Ain Shams University. Her research interests include bioinformatics, signal processing, machine learning, and deep learning. She has published ten publications in these areas.
Hadeer El-Saadawy received the B.Sc. (Hons.), M.Sc., and Ph.D. degrees in scientific computing from Ain Shams University, in 2013, 2018, and 2021, respectively. She is currently a Lecturer with the Department of Scientific Computing, Faculty of Computer and Information Sciences, Ain Shams University. Her research interests include bioinformatics, signal processing, machine learning, and deep learning. She has published ten publications in these areas.View more
Author image of Hala M. Ebied
Department of Scientific Computing, Ain Shams University, Cairo, Egypt
Hala M. Ebied received the B.Sc. degree in pure mathematics and computer science from the Faculty of Science, Ain Shams University, Egypt, and the M.Sc. and Ph.D. degrees in computer and information sciences from Ain Shams University, in 2002 and 2009, respectively. She has been a Professor with the Faculty of Computer and Information Sciences (FCIS), Ain Shams University, Egypt, since 2019. From 2006 to 2008, she was a Ph.D. Student with the Heinz Nixdorf Institute, University of Paderborn, Germany. Since December 2016, she has been the Director of the Quality Unit, FCIS, where she has been the Head of the Scientific Computing Department, since January 2018. Since August 2018, she has been the Vice Dean for the Education and Students Affairs, FCIS. She has coauthored about 90 research articles in refereed journals and international conferences. Her research interests include neural networks and deep learning, computer vision, machine learning, and robotics.
Hala M. Ebied received the B.Sc. degree in pure mathematics and computer science from the Faculty of Science, Ain Shams University, Egypt, and the M.Sc. and Ph.D. degrees in computer and information sciences from Ain Shams University, in 2002 and 2009, respectively. She has been a Professor with the Faculty of Computer and Information Sciences (FCIS), Ain Shams University, Egypt, since 2019. From 2006 to 2008, she was a Ph.D. Student with the Heinz Nixdorf Institute, University of Paderborn, Germany. Since December 2016, she has been the Director of the Quality Unit, FCIS, where she has been the Head of the Scientific Computing Department, since January 2018. Since August 2018, she has been the Vice Dean for the Education and Students Affairs, FCIS. She has coauthored about 90 research articles in refereed journals and international conferences. Her research interests include neural networks and deep learning, computer vision, machine learning, and robotics.View more
Author image of Dina Khattab
Department of Scientific Computing, Ain Shams University, Cairo, Egypt
Dina Khattab received the B.S. and M.S. degrees in scientific computing and the Ph.D. degree in computer vision in the field of 2-D/3-D segmentations and deformations from the Faculty of Computer and Information Sciences, Ain Shams University, Cairo, Egypt, in 2003, 2008, and 2016, respectively.
From 2010 to 2011, she has collaborated as a Guest Researcher with the Group of Computer Graphics, Max-Planck Institut Informatik (MPII), Saarland University, Saarbrücken, Germany. Since 2016, she has been a Lecturer with the Department of Scientific Computing, Faculty of Computer and Information Sciences, Ain Shams University. Her activity was in image segmentation and human model deformations. She has participated in the Summer School of Deep Learning, Las Palmas, Gran Canaria, Spain, in 2022. She is the author of more than 20 publications with more than 160 citations. Her research interests include self-supervised learning representation and scene graph generation for visual scene understanding. She has contributed to numerous computer vision researches, ranging from theory to design and implementation, with a focus on improving AI models quality. She was a Guest Editor of the Journal of Imaging Special Issue on Advancing Color Image Processing, in 2021.
Dina Khattab received the B.S. and M.S. degrees in scientific computing and the Ph.D. degree in computer vision in the field of 2-D/3-D segmentations and deformations from the Faculty of Computer and Information Sciences, Ain Shams University, Cairo, Egypt, in 2003, 2008, and 2016, respectively.
From 2010 to 2011, she has collaborated as a Guest Researcher with the Group of Computer Graphics, Max-Planck Institut Informatik (MPII), Saarland University, Saarbrücken, Germany. Since 2016, she has been a Lecturer with the Department of Scientific Computing, Faculty of Computer and Information Sciences, Ain Shams University. Her activity was in image segmentation and human model deformations. She has participated in the Summer School of Deep Learning, Las Palmas, Gran Canaria, Spain, in 2022. She is the author of more than 20 publications with more than 160 citations. Her research interests include self-supervised learning representation and scene graph generation for visual scene understanding. She has contributed to numerous computer vision researches, ranging from theory to design and implementation, with a focus on improving AI models quality. She was a Guest Editor of the Journal of Imaging Special Issue on Advancing Color Image Processing, in 2021.View more

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