Efficient Deep Gaussian Process Models for Variable-Sized Inputs

Deep Gaussian processes (DGP) have appealing Bayesian properties, can handle variable-sized data, and learn deep features. Their limitation is that they do not scale well with the size of the data. Existing approaches address this using a deep random feature (DRF) expansion model, which makes inference tractable by approximating DGPs. However, DRF is not suitable for variable-sized input data such as trees, graphs, and sequences. We introduce the GP-DRF, a novel Bayesian model with an input layer of GPs, followed by DRF layers. The key advantage is that the combination of GP and DRF leads to a tractable model that can both handle a variable-sized input as well as learn deep long-range dependency structures of the data. We provide a novel efficient method to simultaneously infer the posterior of GP's latent vectors and infer the posterior of DRF's internal weights and random frequencies. Our experiments show that GP-DRF outperforms the standard GP model and DRF model across many datasets. Furthermore, they demonstrate that GP-DRF enables improved uncertainty quantification compared to GP and DRF alone, with respect to a Bhattacharyya distance assessment.