SC1: A web-based single cell RNA-seq analysis pipeline

Single cell RNA-Seq (scRNA-Seq) is critical for studying cellular heterogeneity and development of tissues and tumors. There are currently only few tools that allow researchers to analyze scRNA-seq data without considerable coding efforts. Here, we present an interactive web-based pipeline for single-cell RNA-Seq data analysis that allows researchers to analyze data in an efficient work-flow. The tool also implements a novel and unique method of selecting informative genes before clustering and differential expression analysis.