Improving the multiple alignments in genomics using a new formula for paradox omission to increase accuracy and speed

In comparative genomics, recognizing the similar genomic areas is possible by comparing genetic information in gene sequences within the genomes, and it can be used for studying structural and developmental process of genomes. Based on alignment of these similar genomic parts, some profiles are made for the similar genome parts. Progressive and greedy methods have been already presented for aligning gene lists, and the result for greedy methods have been better, since they are based on creative methods. Our goal is to increase the accuracy of alignment using a new formula for paradox omission. Therefore according to inputted graph structure and based on a new greedy method.