Welcome to IEEE Xplore 2.0: Finding transcription factor binding sites in DNA sequences: a template based approach

Cart | Sitemap | Help

AbstractPlus


	BROWSE	SEARCH	IEEE XPLORE GUIDE	SUPPORT

View TOC

Finding transcription factor binding sites in DNA sequences: a template based approach

Gunewardena, S. Zhaolei Zhang
Comput. Lab., Oxford Univ.;

This paper appears in: Statistical Signal Processing, 2005 IEEE/SP 13th Workshop on
Publication Date: 17-20 July 2005
On page(s): 990-995
ISBN: 0-7803-9403-8
INSPEC Accession Number: 9122935
Digital Object Identifier: 10.1109/SSP.2005.1628739
Current Version Published: 2006-05-08

Abstract
The short and highly degenerate nature of transcription factor (TF) binding sites makes their identification a challenging task. We propose a new method based on templates for identifying TF binding sites. Templates account for sequence structure and nucleotide polymorphisms present in TF binding sits providing them with a greater discriminatory capability to methods based on sequence homology

Index Terms
Inspec

Controlled Indexing
DNA

Non-controlled Indexing
DNA sequences nucleotide polymorphisms sequence homology template based approach transcription factor transcription factor binding sites

Author Keywords
Not Available

Medical Subject Heading (MeSH Terms)
Not Available

PACS Codes
Not Available

DOE Thesaurus Terms
Not Available

References

No references available on IEEE Xplore.

Citing Documents

No citing documents available on IEEE Xplore.

Access this document

Full Text: PDF (146 KB)

Download this citation

Choose

Download

» Learn More

Rights and Permissions

» Learn More

View TOC | Back to Top

Help Contact Us Privacy & Security IEEE.org