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IRCDB: A Database of Inter-residues Contacts in Protein Chains

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7 Author(s)
Peng Chen ; Dept. of Syst. & Comput. Sci., Howard Univ., Washington, DC ; Chunmei Liu ; Legand Burge ; Mahmood Mohammad
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In protein structure prediction, identifying the inter-residue contacts is a very important task to understand the mechanism of complicated protein folding and therefore to predict three-dimensional structures of proteins. So far, many methods were developed to predict inter-residue contacts. However, no special database consisting of detailed inter-residue contacts for each PDB protein chain has been built. Our database of inter-residue contacts in protein chains consists of protein chains extracted from PDB database. For each protein chain, we analyzed its inter-residue contacts, classified it into one class, and obtained several groups of inter-residues contacts.

Published in:

Advances in Databases, Knowledge, and Data Applications, 2009. DBKDA '09. First International Conference on

Date of Conference:

1-6 March 2009