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A three-dimensional animation system for protein folding simulation

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4 Author(s)
Akahoshi, M. ; Inst. for New Generation Comput. Technol., Tokyo, Japan ; Onizuka, K. ; Ishikawa, M. ; Asai, K.

We have developed a new computer language that describes three-dimensional graphical objects in visual simulation. The language, 3D-Talk is a powerful tool for visualizing the process of protein folding simulation. 3D-Talk is designed as an object-oriented language with which users can create, manipulate, and edit graphical objects using commands with a syntax similar to that of a natural language. We developed two novel molecular biology applications using 3D-Talk. The first, ProView, is a protein visualization tool. ProView converts PDB (Protein Data Bank) data into 3D-Talk statements. The second is a visual simulation system for protein folding. It simulates the motion of protein folding using simulated annealing techniques and Hidden Markov Models. In short, 3D-Talk serves as a powerful animation tool.<>

Published in:

System Sciences, 1994. Proceedings of the Twenty-Seventh Hawaii International Conference on  (Volume:5 )

Date of Conference:

4-7 Jan. 1994

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