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SWASAD: an ASIC design for high speed DNA sequence matching

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2 Author(s)
T. Han ; Comput. Sci. & Electr. Eng., Queensland Univ., Qld., Australia ; S. Parameswaran

Presents the Smith and Waterman algorithm-specific ASIC design (SWASAD) project. This is a hardware solution that implements the S and W algorithm.. The SWASAD is an improved implementation of the biological information signal processor (BISP) design. The SWASAD chip fabricated on a 0.5 μm process achieves 3200 million matrix cells per second (MCPS) per chip, with a layout size of 7.1 mm by 7.1 mm. This is a large improvement over existing designs and improves data throughput by using a smaller datawidth

Published in:

Design Automation Conference, 2002. Proceedings of ASP-DAC 2002. 7th Asia and South Pacific and the 15th International Conference on VLSI Design. Proceedings.

Date of Conference:

2002