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A method of comparing protein structures based on matrix representation of secondary structure pairwise topology

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3 Author(s)
Ohkawa, T. ; Dept. of Inf. Syst. Eng., Osaka Univ., Japan ; Hirayama, S. ; Nakamura, H.

This paper presents a method of comparing protein structures based on pairwise secondary structure topology. In this method, the spatial relation (sometimes rough relation) between any two secondary structural segments in a protein is represented as an element of the matrix data. The structure comparison is achieved by comparing two matrices using a pattern matching technique. In order to confirm the validity of the proposed method, experiments on similar protein retrieval was performed which showed that the method was effective

Published in:

Information Intelligence and Systems, 1999. Proceedings. 1999 International Conference on

Date of Conference:

1999