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Improving Molecular Dynamics Simulation Performance on Low-Cost Systems

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5 Author(s)

For simulation-based work, researchers often have limited hardware capacities and budgets, so they create a low-cost parallel computing platform using PCs and commodity hardware, assembled and configured as a Beowulf-class computing cluster. Here, an astute approach (for a molecular dynamics simulation example) greatly improves performance through hardware upgrades and other tricks.

Published in:

Computing in Science & Engineering  (Volume:15 ,  Issue: 3 )

Date of Publication:

May-June 2013

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