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This paper introduces a design of high voltage pulse power supply that uses storage battery as prime power resource. This high voltage pulse power supply system can work without alternating current power supply and can be controlled by the remote control centre. Besides, some important information can be gained and displayed on the computer, such as the position, status, measured feedback of output voltage and current and so on. The purpose of the design is that the system can not only reliably work in laboratory but also outdoors. Mostly, we can use this system to drive some important high voltage equipments, such as accelerator of intense charged particle beams, explosively-driven magnetic flux compression generators and so on. To ensure the system to work reliably and stably, this paper analyzes the interference sources, interference channels, because this system may work in complicated electromagnetism condition. And some effective anti-interference measures of both hardware and software are used in the design.