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This paper highlights the design of a chemistry based puzzle game. The design of the game is meant to teach basic concepts of chemistry related to covalent bonds. The area of Educational Technology is still not so developed for young learners. An interactive technology is required for learning effectively and efficiently. The result is Atoms to Molecule (A2M). In A2M the environment of the levels are designed as such a player will have complete feel of chemistry lab. This game tries to intact fun with education. In this paper we are trying to highlight the features of chemistry objects which are used in our game. While teaching the basic concept of Chemistry, like bonds between atoms and how molecules are formed teacher usually gives examples to define the formation of bonds. However, the concepts of atoms and molecules are difficult for students to imagine. This game A2M has clearly presented the concepts lying behind the formation of bonds, game rules and simple game levels is chosen as the teaching aid along with a fun puzzle game.