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To solve the problem that current intrusion detection model needs large-scale data in formulating the model in real-time use, an intrusion detection system model based on grey theory (GTIDS) is presented. Grey theory has merits of fewer requirements on original data scale, less limitation of the distribution pattern and simpler algorithm in modeling. With these merits GTIDS constructs model according to partial time sequence for rapid detect on intrusive act in secure system. In this detection model rate of false drop and false retrieval are effectively reduced through twice modeling and repeated detect on target data. Furthermore, GTIDS framework and specific process of modeling algorithm are presented. The affectivity of GTIDS is proved through emulated experiments comparing snort and next-generation intrusion detection expert system (NIDES) in SRI international.