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Intelligentized distributed system is advanced mode of network operation in agile manufacturing system. In intelligent agile manufacturing, Architecture of knowledge base directly influences intelligent level of manufacture. Application knowledge and reorganization are two sides of implement intelligent application. When application knowledge don't meet needs of application, starting reorganization knowledge base architecture will get new application knowledge. This is second level knowledge base(shallow knowledge and depth knowledge) architecture. Research of knowledge base in agile manufacturing will provide implemented knowledge architecture for intelligent agile manufacturing system and enable whole system high knowledge.