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Similarities Of DNA sequences based on 3D chaos game representation

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2 Author(s)
Hailan Huang ; School of Mathematics and Computational Science, Xiangtan University, Hunan 411105, China ; Long Shi

Based on 3D chaos game representation of DNA sequence, we obtain four characteristic curves. The geometrical centers and mean deviation of four curves have been grouped into a sixteen-component vector to represent the DNA sequence. The Euclidean distances among introduced vectors are applied to characterize and compare the coding sequences of the first exon of beta globin gene of 11 different species.

Published in:

2010 3rd International Conference on Biomedical Engineering and Informatics  (Volume:6 )

Date of Conference:

16-18 Oct. 2010