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In view of the growing number of network security threats and the current intrusion detection system is often helpless in the face of some attacks, this paper analyzes and compares the traditional network security technology and network intrusion detection system's theories, gives a new design based on the distributed intelligent network intrusion detection system. The new system includes four modules: control center, mobile agent, knowledge base and honeypot deploy module. The system uses mobile agent for efficient intrusion detection, and integrates honeypot technology to update the knowledge base and manage the system resources dynamically. It possesses a certain flexibility and security.