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Current trends in health management improvement demand the standardization of care protocols to achieve better quality and efficiency. The use of Clinical Pathways is an emerging solution for that problem. However, current Clinical Pathways are big manuals written in natural language and highly affected by human subjectivity. These problems make the deployment and dissemination of them extremely difficult in real practice environments. In this work, a complete computer based architecture to help the representation and execution of Clinical Pathways is suggested. Furthermore, the difficulties inherent to the design of formal Clinical Pathways in this way requires new specific design tools to help making the system useful. Process Mining techniques can help to automatically infer processes definition from execution samples. Yet, the classical Process Mining paradigm is not totally compatible with the Clinical Pathways paradigm. In this paper, a pattern recognition algorithm based in an evolution of the Process Mining classical paradigm is presented and evaluated as a solution to this situation. The proposed algorithm is able to infer Clinical Pathways from execution logs to support the design of Clinical Pathways.