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Petri net is a tool suited for describing system with the feature of concurrence, asynchronization, distribution and undecision. This paper studied and realized a modelling method based on Petri net which integrated Object-Oriented approach and Petri net method, calling Timed Object-Oriented Petri net. It's more powerful to describe complex system but with less complex Petri net structure. We researched how to realize this method in computer simulation and applied this theory to the confrontation simulation of cruise missile interception system, which is a very complex system.