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Design and development of software tools for Bio-PEPA

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5 Author(s)
Duguid, A. ; Sch. of Inf., Univ. of Edinburgh, Edinburgh, UK ; Gilmore, S. ; Guerriero, M.L. ; Hillston, J.
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This paper surveys the design of software tools for the Bio-PEPA process algebra. Bio-PEPA is a high-level language for modelling biological systems such as metabolic pathways and other biochemical reaction networks. Through providing tools for this modelling language we hope to allow easier use of a range of simulators and model-checkers thereby freeing the modeller from the responsibility of developing a custom simulator for the problem of interest. Further, by providing mappings to a range of different analysis tools the Bio-PEPA language allows modellers to compare analysis results which have been computed using independent numerical analysers, which enhances the reliability and robustness of the results computed.

Published in:

Simulation Conference (WSC), Proceedings of the 2009 Winter

Date of Conference:

13-16 Dec. 2009