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Agriculture is the basic industry of the national economy, and agriculture is a so important industry especially for China. Therefore, the healthy development of agriculture and rural economy affects the overall situation of our national economy. It has important practical significance to study modern logistics system in rural areas. The core of fuzzy comprehensive evaluation on modern rural logistics construction is membership degree transformation. But the existing transformation methods should be questioned, because redundant data in index membership degree is also used to compute object membership degree, which is not useful for object classification. The paper applied a new algorithm in fuzzy comprehensive evaluation on modern rural logistics construction.