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Industry innovation is critical for industry adjustment and escalation, and is the terminal embodiment of international competitive power. The concept of industry innovation system tries to provide a multi, comprehensive, dynamic, evolutive idea of industry innovation. This concept can better interpret industry structure, verge, organization and their relationship, learning process, innovation and producing process and the process of system coordination evolution. The thesis establishes the evaluation index and evaluation model of industry innovation system based on the theories of technological economics, econometrics and industrial economics, etc., which provides not only reference for the development of China industry innovation system research but also foundation for the stipulation of concerning policies.