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Automating Three-Dimensional Reconstruction of Icosahedral Virus Structure with Condensed Graphs

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3 Author(s)
Chenqi Wang ; Dept. of Comput. Sci., Univ. Coll. Cork, Cork, Ireland ; Cafferkey, N. ; Morrison, J.P.

We present a visual executable workflow for the three-dimensional reconstruction of icosahedral virus structure using the traditional model (TM) method. This workflow is implemented using WebCom, a metacomputer platform based on the condensed graph (CG) model. The CG model allows the application to be constructed with a structure that closely mirrors an abstract description of the workflow. By utilising WebCom's integrated development environment, we also create a workbench environment that facilitates construction of related workflows through the reuse of components developed for the TM workflow. As an example of this component reuse, we outline the construction of a workflow for the alternative unbiased model reconstruction method.

Published in:

Parallel and Distributed Computing, 2009. ISPDC '09. Eighth International Symposium on

Date of Conference:

June 30 2009-July 4 2009