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Teaching evaluation plays an important role in our higher education nowadays. In view of the problems existing in previous system of teaching quality, According to our teaching characteristics a new model of fuzzy neural comprehensive evaluation is set up by means of fuzzy theory and neural network. And the application procedure of the model is illuminated in detail. By analyzing a lot of practical examples, the experiment result indicates that this mathematical model has better appraisal effect and can overcome the complexity of traditional evaluation model. Compared with other methods, this method is scientific, simple and operable. And its structure and method will have a bright future.