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Command agent has characteristics such as autonomy, reactivity, sociality. In line with command agent's characteristics, multi-agent and petri nets reintroduced into the study of command agent. The existing Agent-Oriented Petri Nets is improved. Based on the improved AOPN, the specific conduct course of command agent is analyzed in-depth. The formalized model of a single command agent and the architecture model of command and control system composed of multi-agents are separately set up, the transfer mechanism of the token is discussed, and the method of message transfer using KQML is briefly introduced.The improved model has not only the function of existing AOPN model, but also evaluation function.