Cart (Loading....) | Create Account
Close category search window

A Fast Exact Pattern Matching Algorithm for Biological Sequences

Sign In

Cookies must be enabled to login.After enabling cookies , please use refresh or reload or ctrl+f5 on the browser for the login options.

Formats Non-Member Member
$31 $13
Learn how you can qualify for the best price for this item!
Become an IEEE Member or Subscribe to
IEEE Xplore for exclusive pricing!
close button

puzzle piece

IEEE membership options for an individual and IEEE Xplore subscriptions for an organization offer the most affordable access to essential journal articles, conference papers, standards, eBooks, and eLearning courses.

Learn more about:

IEEE membership

IEEE Xplore subscriptions

4 Author(s)
Yong Huang ; Coll. of Comput. Sci. & Technol., Zhejiang Univ., Hangzhou ; Lingdi Ping ; Xuezeng Pan ; Guoyong Cai

Pattern matching is a powerful tool for querying sequence patterns in the biological sequence databases. The remarkable increase in the number of DNA and proteins sequences has also stimulated the study of many pattern matching algorithms. To further raise the performance of the pattern matching algorithm, a fast exact algorithm (called BRFS) is presented. It bases on the method of FS algorithm and absorbs the idea of BR algorithm during the pattern matching, thus reaches the best shift distance and improves the performance. The best, worst and average cases in time complexities of the new algorithm are also discussed. The experimental results show that the new algorithm is faster than other compared algorithms for small alphabets and long patterns, so the proposed algorithm is quite applicable for pattern matching in biological sequences.

Published in:

BioMedical Engineering and Informatics, 2008. BMEI 2008. International Conference on  (Volume:1 )

Date of Conference:

27-30 May 2008

Need Help?

IEEE Advancing Technology for Humanity About IEEE Xplore | Contact | Help | Terms of Use | Nondiscrimination Policy | Site Map | Privacy & Opting Out of Cookies

A not-for-profit organization, IEEE is the world's largest professional association for the advancement of technology.
© Copyright 2014 IEEE - All rights reserved. Use of this web site signifies your agreement to the terms and conditions.