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In this paper, we propose an enhancement partition method that incorporates formal partition, fitting system constraints and hardware orient partition algorithm to solve partitioning issue for embedded multiprocessor FPGA systems. With formal partition, we can rapidly obtain a set of partitioning results that satisfy the system constraints on the number of processors. To fit various system constraints, we find out all partition result sets by fitting system constraints. Finally, hardware orient partition can provide a nearly best partition result for designer to develop multiprocessors system-on-a-chip system. Experiment results show that the proposed method can obtain the fitting best partitioning result than other partitioning method using JPEG encoding system example.