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The construction of disciplines is a fundamental construction of universities and colleges and so it is the most important work of reform and development of higher learning institutions. The management of disciplinary project links up the individual disciplinary pattern and the platform-base pattern as one disciplinary constructive pattern which is at first applied to "211 project". In this paper, we first proposed four presuppositions for knowledge flows and innovation to form networks, and established models based on these presuppositions. Through the digital simulation we discover the stochastic degree of networks, the innovative coefficient of characteristic and superiority disciplines as number of disciplines at the right time having an important influence on the flows and growth of knowledge.