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Measuring Spatiotemporal Dependencies in Bivariate Temporal Random Sets with Applications to Cell Biology

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7 Author(s)
Diaz, E. ; Dept. of Comput. Sci., Univ. of Valencia, Burjasot ; Sebastian, R. ; Ayala, G. ; Diaz, M.E.
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Analyzing spatiotemporal dependencies between different types of events is highly relevant to many biological phenomena (e.g., signaling and trafficking), especially as advances in probes and microscopy have facilitated the imaging of dynamic processes in living cells. For many types of events, the segmented areas can overlap spatially and temporally, forming random clumps. In this paper, we model the binary image sequences of two different event types as a realization of a bivariate temporal random set and propose a nonparametric approach to quantify spatial and spatiotemporal interrelations using the pair correlation, cross-covariance, and the Ripley K functions. Based on these summary statistics, we propose a randomization procedure to test independence between event types by applying random toroidal shifts and Monte Carlo tests. A simulation study assessed the performance of the proposed estimators and showed that these statistics capture the spatiotemporal dependencies accurately. The estimation of the spatiotemporal interval of interactions was also obtained. The method was successfully applied to analyze the interdependencies of several endocytic proteins using image sequences of living cells and validated the procedure as a new way to automatically quantify dependencies between proteins in a formal and robust manner.

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Pattern Analysis and Machine Intelligence, IEEE Transactions on  (Volume:30 ,  Issue: 9 )