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Normalized maximum likelihood model of order-1 for the compression of DNA sequences

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2 Author(s)
Korodi, G. ; Inst. of Signal Process., Tampere Univ. of Technol. ; Tabus, I.

We present the NML model for classes of models with memory described by first order dependencies. The model is used for efficiently locating and encoding the best regressor present in a dictionary. By combining the order-1 NML with the order-0 NML model the resulting algorithm achieves a consistent improvement over the earlier order-0 NML algorithm, and it is demonstrated to have superior performance on the practical compression of the human genome

Published in:

Data Compression Conference, 2007. DCC '07

Date of Conference:

27-29 March 2007