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Using FPGA Devices to Accelerate Biomolecular Simulations

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5 Author(s)

A field-programmable gate array implementation of a molecular dynamics simulation method reduces the microprocessor time-to-solution by a factor of three while using only high-level languages. The application speedup on FPGA devices increases with the problem size. The authors use a performance model to analyze the potential of simulating large-scale biological systems faster than many cluster-based supercomputing platforms

Published in:

Computer  (Volume:40 ,  Issue: 3 )