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Efficient parallel algorithms for processing biological sequences

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4 Author(s)
Rajasekaran, S. ; Dept. of CSE, Connecticut Univ., CT, USA ; Ammar, R. ; Shin, D.G. ; Zhang, G.

Processing of biological sequences is a compute-intensive problem. The amount of data available in biology is enormous that sequential techniques will take a very long time to process them. In this paper we present many parallel algorithms for biological data processing. We consider a scenario where the operations performed on the sequences are arbitrary. In particular we assume that a sequential algorithm (or program) is given as an input (with the option of making several copies). The input consists of a file of sequences to be processed. The goal is to process all these sequences as efficiently as possible.

Published in:

Signal Processing and Information Technology, 2003. ISSPIT 2003. Proceedings of the 3rd IEEE International Symposium on

Date of Conference:

14-17 Dec. 2003

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