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Distributed load balancing for molecular dynamics simulations

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2 Author(s)
Di Serio, A. ; Departamento de Computacion y Tecnologia de la Informacion, Simon Bolivar Univ., Caracas, Venezuela ; Ibanez, M.B.

We customize a dynamic load balancer to the molecular dynamics problem. The balancer is distributed, it requires no long-distance inter-process communications but only those among adjacent processors. It works accurately achieving significant time improvements when the system maintains moderate imbalance levels. The overhead is a problem only when the system does not achieve a minimum threshold imbalance.

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High Performance Computing Systems and Applications, 2002. Proceedings. 16th Annual International Symposium on

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