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A parallel hybrid genetic algorithm for multiple protein sequence alignment

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4 Author(s)
Hung Dinh Nguyen ; Graduate Sch. of Eng., Miyazaki Univ., Japan ; Yoshihara, I. ; Yamamori, K. ; Yasunaga, M.

This paper presents a parallel hybrid genetic algorithm (GA) for solving sum-of-pairs multiple protein sequence alignment. The method is based on a multiple population GENITOR-type GA and involves local search heuristics. It is then extended to parallel to exploit the benefit of a multiprocessor system. Benchmarks from the BAliBASE library are used to validate the method

Published in:

Evolutionary Computation, 2002. CEC '02. Proceedings of the 2002 Congress on  (Volume:1 )

Date of Conference:

12-17 May 2002