Reducing memory complexity using data minimization technique on FPGA

The effect of DNA sequence data minimization technique in converting eight bit DNA data to new two bits DNA data representation is presented. Memory complexity for the data minimization technique is compared and analyzed with existing DNA sequences data managing technique for determine the best solution for reducing the memory consumption for DNA sequences alignment accelerator application. The technique is designed, synthesized and simulated using Altera Quartus II version 9.1 EDA software and targeted to Cyclone II EP2C35 FPGA. The code was written using Verilog HDL language. Furthermore, the simulation effect between these techniques was carried out, presented and analyzed in this paper.